miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|84424479|gb|DW259075.1|DW259075 TTTTTTTTTTTTTTTTTTACTGGTCGTTACTCATGGAGAGAAGAGAATTGATAACTGCGTTCTTGTTACCTCGTTGTGCA
ATGAAAACAGATTGGATCACATCCGTCTCGATGGCAGGAAACATGTCCTTCACAAGTTGAATATCCTCTTCGGTGTAAGT
AGAGGTCGGTGGAGGCAGTTGCGGCTGTTGGTAGACTGGCGTACCACCAACAATGGGCTGCTGCTGCTGCTGCTGTTGTT
GCATCGGTGCATAGAACATTCCTGGACTCACAACTTGGGGAATAACCATGGCGGGTTGTGGACAAACAAAACTGCCCATC
GAAAGGTTTTGGATTGGAGTGAAGGTTAAGACGAGGTTAATCATGCCTTCTTTTTCTTCCCCCTGTCGTCCACTGAGAGG
ATACCAATCATCTAACGTTTCTCCATTAAGTACCGATTGGGGAACAGTGATATGACACCAAGCAATCCGATCATCCACAG
TAAACGATCGCTCATCAAAAATCTCAAGGTACATGCTGTTCACACCCACAGGAAGATAACACTGAACACATTTGTTCCAT
CGAGGGATCTTGGCACCATTGTAAGATGTTGGCGTTTCANATACAGCATGGCCGACTCGAATTCGACAGTAAGGATCCAT
TTTTGTGATGCCGTAGTTTTTTGTCAGTTTAGCCGTGACAAGTGTGATACTCAATCGCCCTGCAATGTTACCAAGTACAN
ATGACACACCTGCTTGATGCTGTGCTTGTANGATCTGAGCACTCTTTCATCNTGAGCATCTGTTGAGCAGTTGG




Most similar to sp|A2RUW1|TOLIP_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
           GN=Tollip PE=2 SV=1
          Length = 274

 Score =  254 bits (649), Expect = 5e-67
 Identities = 125/242 (51%), Positives = 169/242 (69%)
 Frame = -2

Query: 748 QAQHQAGVSXVLGNIAGRLSITLVTAKLTKNYGITKMDPYCRIRVGHAVXETPTSYNGAK 569
           QA  Q      +G + GRLSIT+V AKL KNYG+T+MDPYCR+R+G+AV ETPT++NGAK
Sbjct: 38  QAAQQLQYGGAVGTV-GRLSITVVQAKLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAK 96

Query: 568 IPRWNKCVQCYLPVGVNSMYLEIFDERSFTVDDRIAWCHITVPQSVLNGETLDDWYPLSG 389
            PRWNK +QC +P GV+S YLEIFDER+F++DDRIAW HIT+P+S+  G+  D+WY LSG
Sbjct: 97  NPRWNKVIQCTVPPGVDSFYLEIFDERAFSMDDRIAWTHITIPESLKQGQVEDEWYSLSG 156

Query: 388 RQGEEKEGMINLVLTFTPIQNLSMGSFVCPQPAMVIPQVVSPGMFYAPMXXXXXXXQPIV 209
           RQG++KEGMINLV+++T   +L     + PQP +++P V   G+ Y P+        P  
Sbjct: 157 RQGDDKEGMINLVMSYT---SLPAAMMMPPQPVVLMPTVYQQGVGYVPIAGMPAVCSP-- 211

Query: 208 GGTPVYQQPQLPPPTSTYTEEDIQLVKDMFPAIETDVIQSVFIAQRGNKNAVINSLLSMS 29
           G  P+   P    P     EED++ ++DMFP ++ +VI+SV  AQRGNK+A INSLL M 
Sbjct: 212 GMVPMAMPPPAVAPQPRCNEEDLKAIQDMFPNMDREVIRSVLEAQRGNKDAAINSLLQMG 271

Query: 28  ND 23
            +
Sbjct: 272 EE 273